-> Turning off your computer while the BIOS screen is displayed is rarely the cause of such a problem, rather it occurs when Windows is loading. Specifically, the system BIOS pass the job off to the boot loader, which sets the flag that's later removed about the time the Welcome screen is displayed.
-> Turning your computer off even while Windows is booting rarely results in serious errors which require manual repair. Instead, the system will automatically cover and prompt you to use the 'last known good configuration.'
-> The repair options are not provided when you launch the installer from within Windows because there is no need to access the tools if your computer is bootable.
John
when using Vista. MISSING BOOTMGR ERROR will not allow you to boot to your hard drives.
http://technet2.microsoft.com/WindowsVista/en/library/d807a440-90ce-4457-a23a-359ff2c9b9bf1033.mspx?mfr=true
The solution is to reinstall the OS disk and run a repair. Repair does not work if the OS installation disk is loaded within the OS, it only appears when booted from the Bios screen.

Chowhound
Comic Vine
GameFAQs
GameSpot
Giant Bomb
TechRepublic