problem. I have Trojan Hunter and have not had any issues. I also don't see anything like this posted recently at their forum. Perhaps you should post this there but please give then more information than you have provided here.
This may sound really strange but my TrojanHunter program got infected by a Trojan virus and I had to uninstall the program.
The virus infected the LiveUpdate part of the program and also messed up the loading and shutdown of my computer.