I'm sorry to hear this! Is the firmware completely up to date on your television & Blu-ray? Also do you have the blu-ray connected directly into the television and not a HTS?
I have a Samsung UN65H7150 TV and a Samsung BD-H5900 Blu-ray player. I went through the "Universal Remote Setup" to have the TV remote control the Blu-ray player, but it doesn't work.
Since they are both Samsung products, I have Anynet+ turned on. This allows the Blu-ray player remote to control the TV just fine, but the TV remote still won't control the Blu-ray player.
Now, using the Tools menu on the TV, I can bring up the BD player menu, but I can't actually control or select anything within that menu. What good is that? I can't even control basics like play, pause, stop, FF or rewind. Did I miss something?