From what I remember, there are still small black wires that need to be connected to a power module. Have you done this yet?
If so, and the standard factory reset doesn't work, you should post this in the Samsung sub-forum. Sorry.
I have recently Bought a Home Theater Model Samsung ht-j5550wk.
Managed to connect everything but cant connect the Rear surround speakers to the Wireless Module Model No SWA 7000. I have tried the 0-1-3-5 method, and Resetting the small switch behind it but no changes. The light turns blue, but after a few seconds the Blue and red lights flashes on & on There is no sound coming from the rear speakers and the center one. However, it does show "Wireless Speakers Ready" in the DVD unit. Please help me out as this is now driving me nuts!