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There are several common ways people can verify file system integrity in OS X, including booting to Safe Mode, using Disk Utility, or running the 'fsck' tool. These options have had some people wondering which is best.
fsck to the rescue!
Troubleshooting Mac OS X 10.2.8: fsck issue clarification; Printer Sharing
Troubleshooting Mac OS X 10.2.8 (build 6R73): PCI cards; fsck; Printer Sharing; Repair Disk Permissions and black screens
Odds & Ends: Password length; Update utility; Using su in Terminal; FSCK at startup slowdown